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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60340688_60341609_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60340688 - 60341609
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CATTCTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCACCACCAACT
Flanking Amino Acid:
VPNGSPEEKPASFQ*
Intron Amino Acid Position:
956

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
74.3
0.55
0.8
68.9
31.2
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
45
-0.3
2.1
65.27
44.2

Associated Gene:

Gene:
ITGA9
Ensembl Gene ID:
ENSAPLG00000009236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022111
60138664 - 60341624
202961