Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60426798_60427662_F

Intron Information:

Intron Rank:

147504

Intron Class:

major

Intron Phase:

Intron Coordinates:

60426798 - 60427662

Intron Length:

865

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTATC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTCTCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.9

85.3

32.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

73.5

0.53

72.3

37.5

Minor 5ss

39.9

-1.1

2.8

46.6

41.8

Minor BPS

69.2

0.69

1.5

86.8

32.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029431

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032452

60426035 - 60427944

1910