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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_605081_606256_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
605081 - 606256
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
TATTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
GCTACAAAAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
86.8
0.83
0.7
85.8
28.4
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
43
-0.5
2.1
55.25
42.9

Associated Gene:

Gene:
SNAP47
Ensembl Gene ID:
ENSAPLG00000005035
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005194
583315 - 606413
23099