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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60524633_60531247_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
60524633 - 60531247
Intron Length:
6615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TGCCAAACTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTGCCAAACT
Flanking Amino Acid:
MDIEQPNLYGRFRQLEVLD
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
53.8
0.09
1.1
54.4
39.3
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
48.5
-0
2.4
76.28
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027819
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034693
60523743 - 60552295
28553