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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60531559_60534116_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60531559 - 60534116
Intron Length:
2558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTCCTCTTCATT
Flanking Amino Acid:
TDTAERGTIQVQSFDDEIPC
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
77.6
33.4
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
87.3
0.84
0.7
85
28.5
Minor 5ss
37
-1.5
3.5
55.2
49
Minor BPS
58.7
0.35
1.7
76.4
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027819
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034693
60523743 - 60552295
28553