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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60549746_60550156_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60549746 - 60550156
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATT
Flanking Amino Acid:
EELPEPLVLQNSSLSGKMNI
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
81.5
32
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
90.1
0.9
0.7
89.2
27.5
Minor 5ss
35.6
-1.6
3.3
48.9
41.5
Minor BPS
69.5
0.7
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027819
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034693
60523743 - 60552295
28553