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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60589060_60595849_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60589060 - 60595849
Intron Length:
6790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTGTTTTTAAG
Flanking Amino Acid:
ACNTHPTLDNRD*
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
78
0.63
1
82.5
32.9
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
45.7
-0.4
1.9
51.03
43.7

Associated Gene:

Gene:
PPP1R17
Ensembl Gene ID:
ENSAPLG00000009013
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009369
60585283 - 60595856
10574