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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60649016_60649761_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60649016 - 60649761
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGTTTTGTGATG
Flanking Amino Acid:
RSGMSGFRRSSLNSISPSDV
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
73.9
0.54
1
65.1
45.5
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
47.6
-0.3
2
57.67
38.9

Associated Gene:

Gene:
PDE1C
Ensembl Gene ID:
ENSAPLG00000008225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034604
60648357 - 60815817
167461
ENSAPLT00000008604
60648193 - 60815817
167625
ENSAPLT00000047205
60648193 - 60815817
167625