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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60649883_60657526_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60649883 - 60657526
Intron Length:
7644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTGATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTCTTTCACCT
Flanking Amino Acid:
KSTMVAQSQIGFIDFIVEPT
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
71.5
38.6
Major BPS
77.7
0.69
1
81
30.2
Major PPT
70.9
0.47
1
70.5
39.6
Minor 5ss
41.6
-0.9
2.7
54
43.2
Minor BPS
48.4
-0
1.8
68.64
42.7

Associated Gene:

Gene:
PDE1C
Ensembl Gene ID:
ENSAPLG00000008225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008604
60648193 - 60815817
167625
ENSAPLT00000047205
60648193 - 60815817
167625
ENSAPLT00000034604
60648357 - 60815817
167461