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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60657609_60660503_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60657609 - 60660503
Intron Length:
2895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TTTGTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTATTCTCAATT
Flanking Amino Acid:
MSLLEEFFRQGDKEAELGLP
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.6
0.87
0.7
81.3
36.4
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
70.9
0.73
1.4
84.82
35.6

Associated Gene:

Gene:
PDE1C
Ensembl Gene ID:
ENSAPLG00000008225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047205
60648193 - 60815817
167625
ENSAPLT00000034604
60648357 - 60815817
167461
ENSAPLT00000008604
60648193 - 60815817
167625