About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60660625_60661968_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60660625 - 60661968
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGGGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTAACTTATTT
Flanking Amino Acid:
AMKNALQQPEGIDKPKALSL
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.4
38.7
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.7
0.69
0.9
76.9
42.1
Minor 5ss
28.6
-2.5
2.7
27.3
36.3
Minor BPS
56.4
0.28
1.8
76.4
40.1

Associated Gene:

Gene:
PDE1C
Ensembl Gene ID:
ENSAPLG00000008225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047205
60648193 - 60815817
167625
ENSAPLT00000034604
60648357 - 60815817
167461
ENSAPLT00000008604
60648193 - 60815817
167625