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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60670809_60672345_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60670809 - 60672345
Intron Length:
1537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
CTTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTCCTATATCT
Flanking Amino Acid:
GTTNNFHIQTRSDSAILYND
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
63.1
37.1
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
86.4
0.82
0.7
79.8
32.1
Minor 5ss
24.5
-2.9
3.3
30.5
42.8
Minor BPS
58
0.33
1.9
82.49
38.6

Associated Gene:

Gene:
PDE1C
Ensembl Gene ID:
ENSAPLG00000008225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047205
60648193 - 60815817
167625
ENSAPLT00000034604
60648357 - 60815817
167461
ENSAPLT00000008604
60648193 - 60815817
167625