About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60672447_60683067_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60672447 - 60683067
Intron Length:
10621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGCTCTGTAATT
Flanking Amino Acid:
HYLLFKTGVVHWLTELEIFA
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
84.8
0.78
0.8
81.8
34.9
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
58.1
0.33
2
75.88
41.7

Associated Gene:

Gene:
PDE1C
Ensembl Gene ID:
ENSAPLG00000008225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047205
60648193 - 60815817
167625
ENSAPLT00000034604
60648357 - 60815817
167461
ENSAPLT00000008604
60648193 - 60815817
167625