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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60684678_60689933_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60684678 - 60689933
Intron Length:
5256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCTA
5'SS Class:
major
3'SS Sequence:
CTCATTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ACCATATTAACT
Flanking Amino Acid:
YPPAVIGVLKNVDKWSFDVF
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
70.8
41.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
82.1
0.72
0.8
76.4
32.1
Minor 5ss
41.5
-0.9
3.1
56.7
47.4
Minor BPS
54.6
0.22
1.7
67.71
43

Associated Gene:

Gene:
PDE1C
Ensembl Gene ID:
ENSAPLG00000008225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008604
60648193 - 60815817
167625
ENSAPLT00000047205
60648193 - 60815817
167625
ENSAPLT00000034604
60648357 - 60815817
167461