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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60690001_60691930_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60690001 - 60691930
Intron Length:
1930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTTGATTTATCT
Flanking Amino Acid:
HAVQAGIFVERMYRRTSNMV
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68.4
36.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.9
0.58
1
72.8
37.3
Minor 5ss
29.1
-2.4
3.4
37.5
47.2
Minor BPS
52
0.14
1.9
73.39
43.5

Associated Gene:

Gene:
PDE1C
Ensembl Gene ID:
ENSAPLG00000008225
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047205
60648193 - 60815817
167625
ENSAPLT00000034604
60648357 - 60815817
167461
ENSAPLT00000008604
60648193 - 60815817
167625