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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6077906_6079084_R

Intron Information:

Intron Rank:
128972
Intron Class:
major
Intron Phase:
Intron Coordinates:
6077906 - 6079084
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTCCTGTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77.1
34.1
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
78.2
0.63
0.8
72.3
32.5
Minor 5ss
51.3
0.05
2.4
67
44.2
Minor BPS
52.9
0.09
2
71.21
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016536
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018619
6077600 - 6079518
1919