Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_60794725_60815716_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60794725 - 60815716

Intron Length:

20992

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

TCTTTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

CCTTTCTTATCT

Flanking Amino Acid:

IEKIWLRLRGLRKYKKTSQR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

76.5

38.6

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

89.5

0.89

0.6

22.6

Minor 5ss

-1.1

2.9

57.4

41.1

Minor BPS

66.6

0.6

1.6

78.81

43.9

Associated Gene:

Gene:

PDE1C

Ensembl Gene ID:

ENSAPLG00000008225

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034604

60648357 - 60815817

167461

ENSAPLT00000008604

60648193 - 60815817

167625