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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_608598_609241_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
608598 - 609241
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTATATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GAGTTTATATTT
Flanking Amino Acid:
PDFDYLLQKFGDAIVPVANC
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
81.7
0.71
0.9
78.3
39.6
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
45
-0.3
1.7
57.94
39.5

Associated Gene:

Gene:
JMJD4
Ensembl Gene ID:
ENSAPLG00000005164
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005351
608044 - 613095
5052