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Intron Name: Anas_platyrhynchos_platyrhynchos_2_609408_610521_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

609408 - 610521

Intron Length:

1114

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGAG

5'SS Class:

strong_major

3'SS Sequence:

TTATCTTTTTAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTTAT

U12 Branch Point Sequence:

TTTTCTGAGACC

Flanking Amino Acid:

CLYLKDWHLSRAFPEQDVYT

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

75.1

35.1

Major BPS

66.1

0.4

1.3

59.6

46.8

Major PPT

78.4

0.64

83.3

31.8

Minor 5ss

29.8

-2.3

3.3

37.5

47.2

Minor BPS

49.6

-0

2.3

73.02

38.9

Associated Gene:

Gene:

JMJD4

Ensembl Gene ID:

ENSAPLG00000005164

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005351

608044 - 613095

5052