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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61044887_61045661_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61044887 - 61045661
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
QKSVCVLSQLPLYGLLQAKL
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.9
0.76
0.9
83.4
32
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
AVL9
Ensembl Gene ID:
ENSAPLG00000007697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025875
61023637 - 61060823
37187
ENSAPLT00000008004
61023637 - 61061823
38187