Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61045752_61046112_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61045752 - 61046112

Intron Length:

361

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTAATTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTTTTTTAATT

Flanking Amino Acid:

KDFSQISILKELYDHMNSSL

Intron Amino Acid Position:

213

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

1.1

87.9

29.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

84.9

0.78

0.9

77.2

41.6

Minor 5ss

55.9

0.2

2.5

39.7

Minor BPS

78.6

0.98

86.64

33.8

Associated Gene:

Gene:

AVL9

Ensembl Gene ID:

ENSAPLG00000007697

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025875

61023637 - 61060823

37187

ENSAPLT00000008004

61023637 - 61061823

38187