Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61051199_61051754_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

61051199 - 61051754

Intron Length:

556

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

TGTCACTTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

GGTCCTGTCACT

Flanking Amino Acid:

ALMTVLSLFPGMIEHGLTDC

Intron Amino Acid Position:

285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

71.4

40.1

Major BPS

79.2

0.73

75.3

39.4

Major PPT

79.1

0.65

0.9

69.5

41.3

Minor 5ss

31.8

-2.1

3.1

36.7

42.5

Minor BPS

45.5

-0.2

2.3

66.7

43.9

Associated Gene:

Gene:

AVL9

Ensembl Gene ID:

ENSAPLG00000007697

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025875

61023637 - 61060823

37187

ENSAPLT00000008004

61023637 - 61061823

38187