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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61051403_61055412_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
61051403 - 61055412
Intron Length:
4010

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAA|GCCATGAAA
5'SS Class:
weak_major
3'SS Sequence:
ACAGAAGATCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTATGTTACTC
Flanking Amino Acid:
LKTLIQIAPICNPQSA
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.18
1.3
56.5
41
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
49.6
-0
1.1
36.7
43.5
Minor 5ss
18.4
-3.6
3.5
22.7
29.8
Minor BPS
47.6
-0.2
2.3
65.99
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017782
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022452
61051281 - 61055431
4151