About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61060639_61061728_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61060639 - 61061728
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTGTTTTACA
Flanking Amino Acid:
RNVVQTGKAVGQSVGGAFTS
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.7
0.51
1
67.5
37.7
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
61.2
0.34
2.1
78.96
37.6

Associated Gene:

Gene:
AVL9
Ensembl Gene ID:
ENSAPLG00000007697
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008004
61023637 - 61061823
38187