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Intron Name: Anas_platyrhynchos_platyrhynchos_2_610648_611348_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

610648 - 611348

Intron Length:

701

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGACAG

5'SS Class:

strong_major

3'SS Sequence:

ATTTGCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAA

U12 Branch Point Sequence:

ACTGCCTTTACT

Flanking Amino Acid:

RFVYMGPKGSWTPFHADVFR

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

64.3

41.6

Major BPS

77.9

0.69

0.8

77.9

25.8

Major PPT

73.6

0.53

0.9

66.1

35.3

Minor 5ss

31.4

-2.1

3.1

36.3

41.6

Minor BPS

64.6

0.54

1.8

78.24

43.9

Associated Gene:

Gene:

JMJD4

Ensembl Gene ID:

ENSAPLG00000005164

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005351

608044 - 613095

5052