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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61072639_61075492_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61072639 - 61075492
Intron Length:
2854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTATTGTTAATA
Flanking Amino Acid:
MVLATCSSYFRAMFMSGLSE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
90.6
0.91
0.7
89.2
27.2
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
62.5
0.39
2
75.44
36.3

Associated Gene:

Gene:
KBTBD2
Ensembl Gene ID:
ENSAPLG00000007615
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007898
61070492 - 61076029
5538