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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61088949_61090073_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61088949 - 61090073
Intron Length:
1125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
TTCTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TGTTGCTTAATT
Flanking Amino Acid:
WEIPKSSVRKGRGTRRSLYM
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
86
0.81
0.6
85.4
22
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
74.2
0.84
1.7
88.65
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035874
61083283 - 61090111
6829