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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61088_61550_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61088 - 61550
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
CCTCTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTTCAGATCT
Flanking Amino Acid:
MGASVNFLPENSQPLD
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
70.8
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.5
0.71
0.8
75.6
32.8
Minor 5ss
40.3
-1.1
3
60.6
43.7
Minor BPS
48.9
-0
2
74.57
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008538
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008903
3822 - 61680
57859