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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61098191_61099619_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61098191 - 61099619
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTCCATTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTGCTTTACTA
Flanking Amino Acid:
GNQKLEQFRVAHEDPMYDII
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.2
32.1
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
73.5
0.53
1
74
34.2
Minor 5ss
32.4
-2
2.6
36.4
34.8
Minor BPS
62.7
0.39
1.7
74.34
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007544
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007821
61096802 - 61102904
6103