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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61099712_61100030_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61099712 - 61100030
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
PLGKEVKVMQCWRCKRYGHR
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
57.3
47.1
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
83.5
0.75
0.9
85.6
26.4
Minor 5ss
36.4
-1.5
3.5
48.4
47.2
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007544
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007821
61096802 - 61102904
6103