Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61100142_61102666_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

61100142 - 61102666

Intron Length:

2525

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CCG|GCCCAGGCT

5'SS Class:

weak_major

3'SS Sequence:

GAAACAAAACCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATGAA

U12 Branch Point Sequence:

TTTTTCTGCAGG

Flanking Amino Acid:

KLQPPPGSLPEDCIPDVPGN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.8

0.02

1.3

56.7

39.1

Major BPS

58.9

0.22

49.8

35.1

Major PPT

-0.1

1.1

31.4

39.5

Minor 5ss

15.7

-4

43.1

Minor BPS

47.6

-0.3

2.2

63.41

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007544

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007821

61096802 - 61102904

6103