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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61116322_61119766_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61116322 - 61119766
Intron Length:
3445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGAGGG
5'SS Class:
major
3'SS Sequence:
TCTCCCTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GAGCCACTAACC
Flanking Amino Acid:
AFPDGTRFDSSYDRGSTFNV
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
57
42.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
75
0.56
0.7
73.5
24.7
Minor 5ss
23.3
-3.1
3.2
29.5
43.3
Minor BPS
46.9
-0.2
1.9
56.58
40.7

Associated Gene:

Gene:
FKBP9
Ensembl Gene ID:
ENSAPLG00000007298
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007608
61116065 - 61131875
15811