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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61119913_61120103_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61119913 - 61120103
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAC
U12 Branch Point Sequence:
AGGAAGCAAACT
Flanking Amino Acid:
PKLAYGNEGVSGVIPPNAVL
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
47.4
-0.1
1
50.7
32.1
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
34.3
-1.1
2.4
49.7
43.2

Associated Gene:

Gene:
FKBP9
Ensembl Gene ID:
ENSAPLG00000007298
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007608
61116065 - 61131875
15811