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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61122469_61124640_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61122469 - 61124640
Intron Length:
2172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TATTTTTCCACA
Flanking Amino Acid:
TLLDGTLFDSSYSRNRTYDT
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
85
0.79
0.7
80.5
31.3
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
50
-0
1.9
68.03
38.6

Associated Gene:

Gene:
FKBP9
Ensembl Gene ID:
ENSAPLG00000007298
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007608
61116065 - 61131875
15811