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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61124787_61126068_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61124787 - 61126068
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTGTCCTAATTT
Flanking Amino Acid:
PHLGYGEEGRGKIPGSAVLV
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
75.6
36.7
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
71.4
0.48
0.9
69.5
36.8
Minor 5ss
34.9
-1.7
3.4
45.9
49.3
Minor BPS
59.5
0.38
1.9
79.35
43.5

Associated Gene:

Gene:
FKBP9
Ensembl Gene ID:
ENSAPLG00000007298
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007608
61116065 - 61131875
15811