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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61126244_61128143_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
61126244 - 61128143
Intron Length:
1900

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTT|GCTAGACTC
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAG
U12 Branch Point Sequence:
GTATGTTGAGTT
Flanking Amino Acid:
HYNASLLDGTLHSLGKTYNI
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.2
0.01
1.5
58.6
42.6
Major BPS
57.3
0.18
1.6
57.1
49.4
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
25.1
-2.9
4
41.7
38.6
Minor BPS
44.8
-0.3
2
62.31
42

Associated Gene:

Gene:
FKBP9
Ensembl Gene ID:
ENSAPLG00000007298
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007608
61116065 - 61131875
15811