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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61128290_61129857_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61128290 - 61129857
Intron Length:
1568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
TTTTTTGTGACA
Flanking Amino Acid:
PHLGYGEDGVEGEVPGSAVL
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
82.2
0.72
1
79.9
37.7
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
59
0.28
2
77.15
33.9

Associated Gene:

Gene:
FKBP9
Ensembl Gene ID:
ENSAPLG00000007298
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007608
61116065 - 61131875
15811