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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61130022_61131692_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61130022 - 61131692
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAT
U12 Branch Point Sequence:
GTGTTGTGAGCT
Flanking Amino Acid:
NHDGEVLLEEFSEYIQAQVD
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.2
30.6
Major BPS
67.4
0.43
1.1
57.1
41.8
Major PPT
86.7
0.83
0.7
81
24.1
Minor 5ss
43.2
-0.8
2.9
55.3
48.9
Minor BPS
44.4
-0.3
2.3
65.09
45.3

Associated Gene:

Gene:
FKBP9
Ensembl Gene ID:
ENSAPLG00000007298
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007608
61116065 - 61131875
15811