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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61145739_61146181_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61145739 - 61146181
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATG
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTGTTTATTT
Flanking Amino Acid:
VSNFMDFDENGILRGFKGEL
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.5
38.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82.3
0.73
0.8
77
36.7
Minor 5ss
47.9
-0.2
2.5
64.1
40.5
Minor BPS
54.6
0.22
2
76.04
41.4

Associated Gene:

Gene:
NT5C3A
Ensembl Gene ID:
ENSAPLG00000006931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007222
61144809 - 61172150
27342