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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61146345_61147563_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61146345 - 61147563
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTATATTTACAT
Flanking Amino Acid:
EIVRESDVMLKEGYENFFDK
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
29.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
91.1
0.92
0.6
87.3
23.2
Minor 5ss
43.2
-0.7
2.7
54.4
36.6
Minor BPS
52.8
0.17
1.9
75.07
41.4

Associated Gene:

Gene:
NT5C3A
Ensembl Gene ID:
ENSAPLG00000006931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007222
61144809 - 61172150
27342