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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61147654_61147929_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61147654 - 61147929
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTGTTTATGT
Flanking Amino Acid:
IEEKYPYMVEWYNKSHALLI
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.3
32.5
Major BPS
100
1.24
0.5
100
0
Major PPT
74.6
0.55
1
66.1
45
Minor 5ss
30.9
-2.2
3.4
38.5
41.1
Minor BPS
51.2
0.11
2.3
79.06
43.7

Associated Gene:

Gene:
NT5C3A
Ensembl Gene ID:
ENSAPLG00000006931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007222
61144809 - 61172150
27342