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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61148016_61148424_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61148016 - 61148424
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
GATACATTAAAC
Flanking Amino Acid:
KLITEECRKKLLQLKETYYA
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.4
34.2
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
94.2
0.99
0.5
93.1
16
Minor 5ss
34.4
-1.8
2.8
42.8
44
Minor BPS
54.5
0.12
1.8
64.58
39.6

Associated Gene:

Gene:
NT5C3A
Ensembl Gene ID:
ENSAPLG00000006931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007222
61144809 - 61172150
27342