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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61148472_61149193_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61148472 - 61149193
Intron Length:
722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCCACCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
TTTTTTTCCACC
Flanking Amino Acid:
YNGKRCPTCHNIIDNSKLIT
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
0.9
76
32.7
Major BPS
57
0.17
0.9
65
30.8
Major PPT
72.2
0.5
0.8
62
34.7
Minor 5ss
34.8
-1.7
2.8
45.5
37.1
Minor BPS
55
0.14
2
73.67
37.7

Associated Gene:

Gene:
NT5C3A
Ensembl Gene ID:
ENSAPLG00000006931
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007222
61144809 - 61172150
27342