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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61175792_61176922_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61175792 - 61176922
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
CCCTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTATCTTAACT
Flanking Amino Acid:
ILQVEVGKFVSGTEGLHLAV
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
70.3
35.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
87.2
0.84
0.7
82.2
26.6
Minor 5ss
33.5
-1.9
3.2
40.6
40.2
Minor BPS
85.5
1.19
1
96.55
28.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006877
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007136
61173467 - 61230864
57398