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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61176988_61179660_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61176988 - 61179660
Intron Length:
2673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCGGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
ATGATGTGAAAT
Flanking Amino Acid:
CRKLCVYAVSGTQGNVEHGN
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
68
0.45
1
57.8
39
Major PPT
74.2
0.55
1
73.9
36.8
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
43.3
-0.4
2.1
60.98
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006877
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007136
61173467 - 61230864
57398