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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61179775_61201342_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61179775 - 61201342
Intron Length:
21568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTTTCCTTTCCT
Flanking Amino Acid:
MTYGPFGGVKGRDLICIQSM
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
75.8
35
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
84.6
0.78
0.6
84.6
23.1
Minor 5ss
45.1
-0.5
2.8
60
44.7
Minor BPS
48.1
-0
3.6
85.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006877
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007136
61173467 - 61230864
57398