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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61201518_61207309_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61201518 - 61207309
Intron Length:
5792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
VSSCRQVESYKYQVLVFATD
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
80.7
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.6
0.55
0.9
70
33.8
Minor 5ss
46.4
-0.4
3.2
66.5
39
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006877
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007136
61173467 - 61230864
57398