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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61227099_61230748_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61227099 - 61230748
Intron Length:
3650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTAC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
GAGAGCTGAATG
Flanking Amino Acid:
KIIREAMKTQDILPQSEKRR
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73.4
31.5
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
45.9
-0.4
2.6
60.6
44.5
Minor BPS
43.8
-0.6
1.9
43.1
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006877
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007136
61173467 - 61230864
57398