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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61257261_61259557_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61257261 - 61259557
Intron Length:
2297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CATTAAATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
AATTCTTGAAAA
Flanking Amino Acid:
YFELIDRHFELRLNAEKFRE
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
71.5
0.48
1
63.5
41.3
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
61.4
0.35
1.5
69.61
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028986
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035300
61251543 - 61341821
90279