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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_61314428_61341587_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61314428 - 61341587
Intron Length:
27160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
LPLAEDTQELGWEETVDSAI
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.9
0.72
0.9
77.4
34.7
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028986
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035300
61251543 - 61341821
90279